Analysis Options

1. Select Reference and Comparison Genome(s):

Genomes last loaded from NCBI on 2008-01-30
Reference Genome Comparison Genome(s)

2. Specify an analysis method and any necessary options:

Find homologs for specific gene(s) Get homolog list for a complete genome Compare multiple genomes Determine homology statistics
Browse homologs for specific gene(s) in the the reference genome that are found in the selected comparison genomes. Specify constraints to search for these genes to analyze below:
Gene name
Locus tag
Description
Start position range to
For all genes in the reference genome, get a list of homologs in the selected comparison genomes meeting specified alignment score thresholds

Selecting only a couple Comparison Genomes is recommended for this analysis.

Select an output format:
HTML table
Tab delimited text file
 Compare multiple genomes by determining genes with homologs in some genomes but not in others

Selecting only a couple Comparison Genomes is recommended for this analysis. Selecting 'All Genomes' is not allowed for this analysis.		 Compare genomes based on the proportion of genes in the reference genome with homologs in the comparison genomes

3. Modify BLAST alignment score thresholds for finding gene homologs:

e-value < 1e-1720.110
bit score > 60020020
% identity > 503010
(select one)

4. Select Display Options

Limit results based on top hits Limit results based on homolog cluster scores
Show only top hits for each comparison genome
Show all hits for each comparison genome 		Only show hits with a homolog clustering score of at least


© University of Washington 2008